#Acid gif tab manual#
#Acid gif tab download#

#Acid gif tab download#

Input up to 100,000 protein query sequences as a list of sequence identifiers and/or raw sequence data, then download output in a variety of formats (including tab-delimited text files) or view the search results graphicallyOn the Batch CD-Search job summary page, a 'Browse Results' button above the sample data table allows you to view the results graphically. Offers 6 motif databases and the possibility of using your own.Д¬DD or CD-Search (Conserved Domain Databases) - (NCBI) includes CDD, Smart,Pfam, PRK, TIGRFAM, COG and KOG and is invoked when one uses BLASTP.Д«atch Web CD-Search Tool - The Batch CD-Search tool allows the computation and download of conserved domain annotation for large sets of protein queries. MOTIF (GenomeNet, Japan) - I recommend this for the protein analysis, I have tried phage genomes against the DNA motif database without success.

#Acid gif tab manual#

InterProВ 5 - includes PROSITE, HAMAP (High-quality Automated and Manual Annotation of Proteins), Pfam (protein Families), PRINTS, ProDom, SMART (a Simple Modular Architecture Research Tool), TIGRFAMs, PIRSF (Protein Information Resource), SUPERFAMILY, CATH-Gene3D (Class, Architecture, Topology, Homologous superfamily), and PANTHER (Protein ANalysis THrough Evolutionary Relationships) classification systems.В ( Reference: Jones, P. Motif Scan вЂ“ (MyHits, SIB, Switzerland) includes Prosite, Pfam and HAMAP profiles. Several great sites including the first four which are meta sites: Alternatively, use a meta site such as MOTIF (GenomeNet, Institute for Chemical Research, Kyoto University, Japan) to simultaneously carry out Prosite, Blocks, ProDom, Prints and Pfam search I recommend that you check your protein sequence with at least two different search engines. For background information on this see PROSITE at ExPASy. Online Analysis Tools - Motifs MOTIFS : USING DATABASES & CREATING YOUR OWNД«ACKGROUND INFORMATION: Proteins having related functions may not show overall high homology yet may contain sequences of amino acid residues that are highly conserved.